Try Mimoza now by submitting your model (in SBML format):
- the most detailed view represents the initial network with the generalization-based layout (similar metabolites and reactions are placed next to each other).
- the intermediate view shows the generalized versions of reactions and metabolites in each compartment;
- the general view represents the compartments and the transport reactions between them.
The network map can be browsed online or downloaded as a COMBINE archive containing:
To learn more about or to cite Mimoza, see:
Zhukova, A., Sherman, D. J. (2015). Mimoza: Web-Based Semantic Zooming and Navigation in Metabolic Networks. BMC Systems Biology, 9:10 doi:10.1186/s12918-015-0151-5.
This is a peroxisome of a yeast Y. lipolytica. Zoom in to see the details.